Tag: science

Adult Stem Cell Crowdfunding

The purpose of this project is to enhance a person’s stem cells with factors needed for rapid expansion without cell aging. By providing a practically unlimited supply of one’s own rejuvenated stem cells, we believe it will be possible to keep people young and healthy for over a century. There is also great hope for those with various health conditions related to aging, disease or injury to recover and live life to the fullest.

There are kickstarter campaigns not about knitwear, or someone’s debut film.

DNA sequencing on Mars

venter is such a show off. after wining the human genome race, he sailed around the world, collecting dna samples, and doubled the number of all known genes. then he claimed to have created “synthetic life”, and now this. the man clearly has enormous talent, but i wonder if he is as insufferable as the biography suggests.

Craig Venter and Jonathan Rothberg are competing to put a DNA sequencing machine on Mars, each claiming that it is the best way to search for and confirm Marian life. “This will work only if the DNA on Mars is exactly the same in its fundamental structure as on Earth. It is very unlikely that terran DNA is the only structure able to support Darwinian evolution.” Though I lean slightly toward Venter. Some of the chemistry of DNA life has been shown to imply have the best combinations of stability and just the right breakability and attachment probabilities in the bonds.

Forecast liabilitiy

If you thought rationality is only under attack in the US, think again.

“The verdict is perverse and the sentence ludicrous”. It called for protests against the sentence’s severity and at scientists being criminalized “for the way their opinions were communicated”.

Leading political figures in Italy suggested that the case had blurred the lines between science and public life. “The risk is that doubt will no longer be allowed to form part of scientific judgement. The role of science is not the same as politics or administration.”

Soft exoskeletons

I wonder whether the space or disability applications will come on line first.

2013-05-24: Warrior Web

The Army is nearing completion of a five-month series of tests to evaluate multiple Warrior Web prototype devices. The testing evaluates how each prototype incorporates different technologies and approaches to reduce forces on the body, decrease fatigue, stabilize joints and help Soldiers to maintain a natural gait under a heavy load. The testing uses a multi-camera motion-capture system to determine any changes in gait or balance, a cardio-pulmonary exercise testing device to measure oxygen consumption and a variety of sensors to collect force, acceleration and muscle activity data.

2015-07-20: Harvard Soft Exosuits

compared to a traditional exoskeleton, these systems have several advantages, the wearer’s joints are unconstrained by external rigid structures, and the worn part of the suit is extremely light.

2016-09-25: Exoskeleton to get average soldiers to run 24km/h

2018-07-06: Powered Clothing

Seismic is combining clothing and robotics into what they call Powered Clothing. They aim to get exosuits into stores by the end of 2018 in the US, Japan and the UK. The suit’s ‘electric muscles’, powered by tiny motors, contract and mimic human muscle. These electric muscles are part of the clothing around the joints of the body and attached via grips in the clothing. The grips act like tendons in the human body. A computer and sensors tracking body movements are also integrated into the suit; software tells the muscles in the clothing when to activate. The hard technology components such as motors, batteries and control boards are incorporated into hexagonal low-profile pods, designed for maximum comfort.

Proxima Centauri

The new planet we’ve found there is so very near our own that its night sky shares most of Earth’s constellations. From the planet’s broiling surface, one could see familiar sights such as the Big Dipper and Orion the Hunter, looking just as they do to our eyes here.

2012-10-19: Saturn as viewed from the moon vs Proxima Centauri viewed from Saturn

2020-04-25:

The proposal assumes a peak spacecraft velocity of 10% of the speed of light. Once launched out of Earth’s gravitational well, the remaining spacecraft is composed of 2 stages. The first stage accelerates the spacecraft to 0.1c, detaches from the second stage, and performs a smaller perpendicular burn to deflect its trajectory toward the Proxima Centauri AB binary system for a flyby of that solar system. The second stage decelerates a scientific payload and provides power and support during a decades-long period of exploration.

2022-03-15:

Why is it so difficult to detect planets around Alpha Centauri? Proxima Centauri is one thing; we’ve found interesting worlds there, though this small, dim star has been a tough target, examined through decades of steadily improving equipment. But Centauri A and B, the G-class and K-class central binary here, have proven impenetrable. Given that we’ve found over 4500 planets around other stars, why the problem here?

Proximity turns out to be a challenge in itself. Centauri A and B are in an orbit around a common barycenter, angled such that the light from one will contaminate the search around the other. It’s a 79-year orbit, with the distance between A and B varying from 35.6 AU to 11.2. You can think of them as, at their furthest, separated by the Sun’s distance from Pluto (roughly), and at their closest, by about the distance to Saturn.

The good news is that we have a window from 2022 to 2035 in which, even as our observing tools continue to improve, the parameters of that orbit as seen from Earth will separate Centauri A and B enough to allow astronomers to overcome light contamination. I think we can be quite optimistic about what we’ll find within the decade, assuming there are indeed planets here. I suspect we will find planets around each, but whether we find something in the habitable zone is anyone’s guess.

FDA nonsense

FDA commissioner Alexander M. Schmidt

In all of FDA’s history, I am unable to find a single instance where a congressional committee investigated the failure of FDA to approve a new drug. But, the times when hearings have been held to criticize our approval of new drugs have been so frequent that we aren’t able to count them. … The message to FDA staff could not be clearer.

2013-11-26: as usual, the FDA is up to no good.

At the same time that the NSA is secretly and illegally obtaining information about Americans the FDA is making it illegal for Americans to obtain information about themselves.

2014-08-05: the FDA could help by eliminating its onerous rules for diseases with 60% mortality rates. Won’t happen of course, it’s easier to bury lots of innocents than to overcome cover-your-ass (pretty much the reason for the FDA to exist). Or as the onion put it, the Ebola Vaccine is at least 50 white people away.
2016-07-15: Fluoride still not available

American dentists first started using similar silver-based treatments in the early 1900s. The FDA is literally over 100 years behind the times.It seems that the future of dental treatment has been here all along but a combination of dentists wanting to be surgeons, lost knowledge, and FDA cost and delay prevented it from being distributed

Silver diamine fluoride been used for decades in Japan, but it’s been available in the United States, under the brand name Advantage Arrest, for just ~1 year. Toddlers in low-income families sometimes have to wait 1 year for fillings in an operating room. Transporting and treating frail patients, assuming they can afford to see a dentist, can be difficult. But now some patients can be quickly treated where they live.
2020-04-17: Nutrition overregulation

1 reason why food intended for restaurants is not reallocated to supermarkets: Nutrition labeling also frequently doesn’t comply with Agriculture Department and FDA guidelines for consumer sales

2020-12-05: This is nonsense. “Delay to allay” won’t convince anyone, and meanwhile people are dying.

Dr. Fauci said the politicization of the pandemic in his own country had led regulators to move a little more cautiously than the British, to avoid losing public support. There is no plausible reason why this basic analysis cannot be done in 24 hours. The FDA and external scientists have a simple task: confirm or reject the review already conducted by the trial’s independent data safety monitoring board before FDA submission.

2021-02-07: The FDA is unable to make sense.

Think of centers of expertise like the CDC or the IGM Economists Panel as giant systems for disentangling corruption and power. Their job is to produce 1 or 2 people who can get in front of the population and say something which has some resemblance to reality, even though the entire rest of the economy and body politic is trying to corrupt them. They…actually do sort of okay. Anthony Fauci is neither Attila the Hun nor Trofim Lysenko. He’s a kind of bumbling careerist with a decent understanding of epidemiology and a heart that’s more or less in the right place. The whole scientific-technocratic complex is a machine which takes Moloch as input and manages – after spending billions of $ and the careers of 1000s of hard-working public servants – to produce Anthony Fauci as output. This should be astonishing, and we are insufficiently grateful.

2021-02-15: Why isn’t there a reciprocal approval with the EU?

I’ve long argued that if a drug or medical device is approved in another country with a Stringent Regulatory Authority it ought to be approved in the United States. But, of course, the argument is even stronger in the other direction. Drugs and devices approved in the United States ought to be approved elsewhere. Indeed, this is how much of the world actually works because most countries do not have capability to evaluate drugs and devices the way the FDA or the EMA does. Although it’s the way the world works, few will admit it because that would violate pretensions of regulatory nationalism. Moreover, keeping up with pretenses means transaction costs and unnecessary delays. Regulatory nationalism has added months to vaccine delivery and now threatens to put to waste millions of stockpiled doses.

2021-03-02: millions of people die of heart disease every year. there has been no progress in artificial hearts in 50 years due to.. wait for it.. FDA:

The FDA gave Abiomed permission to implant 60 more devices, but it was clear that the heart would need to be updated, and then approved all over again—a lengthy process for which no one had the fortitude. “Abiomed threw in the towel. They were, like, ‘This is too hard!’ ”

2021-03-16: What are FDA inspectors even doing?

Grocery store workers are working, meat packers are working, hell bars and restaurants are open in many parts of the country but FDA inspectors aren’t inspecting. It boggles the mind.

Let’s review. The FDA prevented private firms from offering SARS-Cov2 tests in the crucial early weeks of the pandemic, delayed the approval of vaccines, took weeks to arrange meetings to approve vaccines even as 1000s died daily, failed to approve the AstraZeneca vaccine, failed to quickly approve rapid antigen tests, and failed to perform inspections necessary to keep pharmaceutical supply lines open.

2021-04-14: the FDA is completely insane and is halting the distribution for the J&J vaccine due to very rare side effects. as before, there’s no consequences for acts of omission vs acts of commission. they’re much more worried about their “reputation” than actually saving lives, just like ethicists have been in this crisis. a disgrace.

As the Johnson & Johnson vaccine pauses in the United States, Philip Bump for The Washington Post offers a quick visualization that shows 100 vaccinations per second. A red one appears if there’s a side effect. But because the side effect is rare, currently at 1 in 1.1M, the red dot on the visualization likely never appears as you watch. The blue dots are potential lives saved if the J&J vaccine continues.

Majorana fermions

“The search for this particle is for condensed-matter physicists what the Higgs boson search was for high-energy particle physicists. It is a very peculiar object because it is a fermion yet it is its own antiparticle with zero mass and zero charge. Whether or not these particles will work for quantum computing has yet to be seen, but in the process of trying we will learn a lot of unknown quantum physics,. This could open the door to a whole new field of the topological effects of quantum mechanics.”

Rewinding evolution

a novel experimental setup that integrates 2 disparate fields – ancestral sequence reconstruction and experimental evolution. This allows us to rewind and replay the evolutionary history of ancient biomolecules in the laboratory. We anticipate that our combination will provide a deeper understanding of the underlying roles that contingency and determinism play in shaping evolutionary processes.

and

scientists in the emerging field of paleogenomics have developed new methods to begin answering some of these questions. By comparing the DNA sequences of many living organisms and working backward, they can infer ancient genomic history, such as when a gene evolved a new function.

No Junk in DNA?

this is a really big deal and i am amused by the multiple google maps references. i was at a NIH workshop with the gentleman in the picture a few years ago (hi Mark Gerstein) and we talked about how google maps like visualizations can help spur discovery in science

i am glad faint echoes of that workshop led to something 🙂

“It’s Google maps”. Its predecessor, the Human Genome Project, which determined the entire sequence of human DNA, “was like getting a picture of earth from space. It doesn’t tell you where the roads are, it doesn’t tell you what traffic is like at what time of the day, it doesn’t tell you where the good restaurants are, or the hospitals or the cities or the rivers.”

The new result “is a stunning resource. My head explodes at the amount of data.”

more on this fight

“We don’t use that term anymore. It was pretty much a case of hubris to imagine that we could dispense with any part of the genome — as if we knew enough to say it wasn’t functional.” Most of the DNA that scientists once thought was just taking up space in the genome, “turns out to be doing stuff.”

and techniques like LIGR-Seq can determine what that DNA does:

“Most researchers in the life sciences agree that there’s an urgent need to understand what ncRNAs do. This technology will open the door to developing a new understanding of ncRNA function”. Not having to rely on pre-existing knowledge will boost the discovery of RNA pairs that have never been seen before. Scientists can also, for the first time, look at RNA interactions as they occur in living cells, in all their complexity, unlike in the juices of mashed up cells that they had to rely on before. This is a bit like moving on to explore marine biology from collecting shells on the beach to scuba-diving among the coral reefs, where the scope for discovery is so much bigger. Actually, ncRNAs come in multiple flavors: there’s rRNA, tRNA, snRNA, snoRNA, piRNA, miRNA, and lncRNA, to name a few, where prefixes reflect the RNA’s place in the cell or some aspect of its function. But the truth is that no one really knows the extent to which these ncRNAs control what goes on in the cell, or how they do this.

These noncoding regions may be the source of de novo genes:

The mystery of where these orphan genes came from has puzzled scientists for decades. But in the past few years, a once-heretical explanation has quickly gained momentum — that many of these orphans arose out of non-coding DNA. “Genetic function somehow springs into existence. This metamorphosis was once considered to be impossible, but a growing number of examples in organisms ranging from yeast and flies to mice and humans has convinced most of the field that these de novo genes exist.